List of recording from the Tonsil-HCA meetings:

You can find the link to all videos here: vimeo.com/user/133636169/folder/3781054

(from October 2021, a brief description of the videos are also included in the Vimeo link)

1st April 2022

Link: https://vimeo.com/697702069

11th March 2022

Link: https://vimeo.com/697703320

25th Feb 2022

Link: https://vimeo.com/697702041

11th Feb 2022

Link: https://vimeo.com/679658459

4th Feb 2022

Link: https://vimeo.com/679658310

28th Jan 2022

Link: https://vimeo.com/672348836

14th Jan 2022

Link: https://vimeo.com/672348217

17th Dec 2021

Link: https://vimeo.com/661373176

Update in PC annotation & analysis (Sergio/Iñaki)
updates on the status of the first 3 figures + writing (Ramon &all)

17th Dec 2021

Link: https://vimeo.com/661373176

Update in PC annotation & analysis (Sergio/Iñaki)
updates on the status of the first 3 figures + writing (Ramon &all)

3rd Dec 2021

Link: https://vimeo.com/664745995

26 Nov 2021

Link: https://vimeo.com/653589718

Update annotation-analysis B cells: Marta/Paula
Planning a B-cell atlas post tonsil atlas: all

19 Nov 2021

Link: https://vimeo.com/648276432

General discussion.

05 Nov 2021

Link: https://vimeo.com/644652224

Ramon: paper draft/figures
Iñaki: plasma cells
Marta: Naive and memory

21 Oct 2021

Link: https://vimeo.com/644651652

-Future Publication Journal discussion
-Overview Samples needed and experimental plan: Ferran

15 Oct 2021

Link: https://vimeo.com/634265162

Will: CD4T cells RNA velocity with scVELO and cellRank
Ramon: discussion on Fig 1
Comments on next publication

8 Oct 2021

Link: https://vimeo.com/634265839

Marco: Histological-Anatomical annotation of spatial transcriptomics/TCL1A in B cells and Lymphomas
Ramon: UMAP (Fig1)
General discussion

1 Oct 2021

Link: https://vimeo.com/634266662

Ramon: Projecting MCL cells onto tonsil atlas
Iñaki: Plasma cells update

24 Sept 2021 

Link: https://vimeo.com/616031899

Marc:
-CD4 Spatial correlation, spatial trajectories
-Cell type deconvolution

Sergio:
-Gene regulatory network: analysis of CD8 and CD4 cells
-Regulon activity

Paula:
CD4 cells scATAC

17 Sept 2021 Plasma cell Level 5 annotation (Sergio)

Link: https://vimeo.com/608923172

10 Sept 2021

Link: https://vimeo.com/604780019 

27 August 2021

Link: https://vimeo.com/604779984

23 July 2021

Link: https://vimeo.com/579562496

16 July 2021

Link: https://vimeo.com/579561039

09 July 2021

Link: https://vimeo.com/579560317

02 July 2021

Link: https://vimeo.com/571179622

25 June 2021

Link: https://vimeo.com/571180519

11 June 2021

Link: https://vimeo.com/562419149

04 June 2021

Link: https://vimeo.com/561267594

28 May 2021

Link: https://vimeo.com/557093625

21 May 2021

Link: https://vimeo.com/553342841

14 May 2021

Link: https://vimeo.com/553269156

30 April 2021

Link: https://vimeo.com/544477197

Selected notes from the conversation: 

00:53:57 Marco Bühler: This are the groups you defined in the plan:

• Myeloid: Marco & Juan
• Epithelial: Marco + ?
• Plasmocytoid: Marco + ?
• FDCs: Marco + ?
• CD4 T Cells: Juan, Ramon
• NK-ILC-CD8: Ramon/Iva (KI, Sweden)
• Naïve/memory B cells: Marta, Sara
• Plasma cells: Iñaki/Xabi, Sara
• Germinal center: Marta/Marco

• 01:15:22 Marco Bühler: Elías says:

Lou staudt has a paper with a loss-of-function RNA interference screen of myltiple mieloma. I wonder if could be some useful information. Cancer Cell 2013 Apr 15;23(4):435-49.

16 April 2021

Link: https://vimeo.com/539334407

09 April 2021

Link: https://vimeo.com/535455453

26 March 2021

Link: https://vimeo.com/530238667

Selected notes/refs from the conversation:

• 00:14:16 Elias Campo: https://pubmed.ncbi.nlm.nih.gov/33526861/
• 00:14:16 Elias Campo: https://pubmed.ncbi.nlm.nih.gov/33526861/
• 00:18:44 Elias Campo: Leukemia. 2020 Aug;34(8):2012-2024. doi: 10.1038/s41375-020-0873-2.
• 00:20:48 Elias Campo: Leukemia. 2019 Mar;33(3):625-637. doi: 10.1038/s41375-018-0250-6.
• 00:25:34 Juan C. Nieto S.: https://www.nature.com/articles/s41375-020-01063-7
• 00:27:18 Juan C. Nieto S.: https://cancerimmunolres.aacrjournals.org/content/canimm/7/5/784.full.pdf
• 00:27:58 Juan C. Nieto S.: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6110381/
• 00:32:08 Juan C. Nieto S.: https://www.nature.com/articles/s41586-019-1325-x

19 March 2021

Link: https://vimeo.com/530237430

• 00:11:57 Ramon Massoni Badosa: https://www.biorxiv.org/content/10.1101/2021.03.16.435578v1.full.pdf
• 00:11:57 Ramon Massoni Badosa: https://www.biorxiv.org/content/10.1101/2021.03.16.435578v1.full.pdf
• 00:54:53 Ramon Massoni Badosa: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3314444/

12 March 2021

Link: https://vimeo.com/520015741

5 March 2021

Link: https://vimeo.com/520015741

Topics:

   Trajectory analysis.

   Spatial Transcriptomics.

26 Feb 2021

First part of the meeting: https://vimeo.com/517702941

Second part of the meeting: https://vimeo.com/517702973

19 Feb 2021

Link: https://vimeo.com/519395950

12 Feb 2021

Link: https://vimeo.com/519395875