Tutorials
Docker 8th February 2024
Organized by Alberto -> see github https://github.com/TranslationalBioinformaticsUnit/DockerSeminar
SnakeMake 11th April 2023
Organized by Robert -> see github https://github.com/roblehmann/snakemake-tutorial
scRNA pipeline standardisation 6th March 2023
Organized by Daniel Mouzo and Xabier Martinez de Morentin
GitHub Seminar 28th June 2022
Organized by Alberto Maillo
Scientific Writing Proposal 26th May 2022
Organized by Vincenzo Lagani
Scientific Writing Workshop 11th April 2022
BioAI: Facts, Fiction and the Future 8th Nov 2021
Jesper Tegner
Deconvolution (discussion) 5th Dec 2021
Causal Analysis 25th Nov 2021
Vincenzo Lagani
Illustrator Tutorial 02 Sept 2021
David Gomez-Cabrero,
ATAC-seq and Reverse Engineering Tutorial 26 May 2021
Nuria Planell and David Gomez-Cabrero,
Part of Computational Medicine PhD Program, Linkoping
On Discovering Nature's Equations from Observations - Jesper Tegner - AMCS Seminar March 18, 2021
LabMeeting – March 23, 2021, 2hour discussion of these topics
ML - Generative Models - Jesper Tegner - Feb 2021
scATAC-seq Review 11th Feb 2021
From the BioInfo-CompBio-ML journal club. Papers considered:
(i) Bioinfo comparing Methods: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1854-5
(ii) cisTopic methodology: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517279/
(iii) DL and ATAC: https://www.biorxiv.org/content/10.1101/829481v1.full.pdf
(iv) Multiomics sc: https://pubmed.ncbi.nlm.nih.gov/33098772/
Link to VIMEO: https://vimeo.com/512138351